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The Transcription Factor Targets1 ontology contains targets of transcription factors from ChIP-chip experiments. The sets were collected by Ron Shamir's group from the literature.


The human ontology contains 19 transcription factors, 5,375 genes, and 9,980 associations.

The mouse ontology contains 6 transcription factors, 1,194 genes, and 1,377 associations.


All data for this ontology was downloaded on March 12, 2009.


Ref Notes
1 Linhart, C., Halperin, Y., Shamir, R. Transcription factor and microRNA motif discovery: the Amadeus platform and a compendium of metazoan target sets. Genome Res. 2008 Jul; 18(7):1180-9.
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