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The Transcription Factor Targets1 ontology contains targets of transcription factors from ChIP-chip experiments. The sets were collected by Ron Shamir's group from the literature.


The human hg19 ontology contains 19 transcription factors, 5,464 genes, and 10,356 associations.

The human hg18 ontology contains 19 transcription factors, 5,472 genes, and 10,368 associations.

The mouse mm9 ontology contains 6 transcription factors, 1,224 genes, and 1,409 associations.


All data for this ontology was downloaded on August 20, 2010.

GREAT v1.2

GREAT v1.2 Transcription Factor Targets statistics are available here.


Ref Notes
1 Linhart, C., Halperin, Y., Shamir, R. Transcription factor and microRNA motif discovery: the Amadeus platform and a compendium of metazoan target sets. Genome Res. 2008 Jul; 18(7):1180-9.
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