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Submitting an HTTP GET request to GREAT is as simple as including the necessary parameters in a URL link (see examples).

As written in GREAT bulk access limits, please limit your GREAT jobs to 1 job per 60 seconds.

Details

requestURL

When GREAT receives a request, it in turn retrieves the BED data at the requestURL via HTTP GET. The requestURL must point to either a BED file or a script that generates BED data (see examples).

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  • Create a joblist of the format: outputFile queryURL where each line is a new job
    • EX:

      No Format
      results1.tsv http://bejerano.stanford.edu/great/public/cgi-bin/greatStart.php?outputType=batch&requestSpecies=hg18&requestName=Example+Data&requestSender=Client+A&requestURL=http%3A%2F%2Fwww.clientA.com%2Fdata%2Fexample1.bed
      results2.tsv http://bejerano.stanford.edu/great/public/cgi-bin/greatStart.php?outputType=batch&requestSpecies=hg18&requestName=Example+Data&requestSender=Client+A&requestURL=http%3A%2F%2Fwww.clientA.com%2Fdata%2Fexample2.bed
      


  • Then run ./greatBatchQuery.py joblist