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Created by Unknown User (awenger), last modified by Unknown User (cmclean) on Jun 10, 2009
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What do the output columns mean?
General
 ID: Term identifier from the ontology
 Rank: ordinal rank of the pvalue compared to the pvalues of other annotations
 Raw pvalue: uncorrected pvalue from the hypergeometric test
 Bonferroni pvalue: Bonferroni corrected pvalue
 FDR qvalue: False discovery rate qvalue
 Fold Enrichment (kN/(nK)): fold enrichment of number of genes in the test set with the annotation (observed / expected)
 Expected (nK/N): expected number of genes in the test set with the annotation
 Observed (k): actual number of genes in the test set with the annotation
 Total Genes (K): number of genes in the genome with the annotation
 Term Coverage (k/K): fraction of all genes with the annotation that are tagged by the test set
 Rank: ordinal rank of the pvalue compared to the pvalues of other annotations
 Raw pvalue: uncorrected pvalue from the binomial test
 Bonferroni pValue: Bonferroni corrected pvalue
 FDR qValue: False discovery rate qvalue
 Fold Enrichment (kN/(nK)): fold enrichment of number of genomic regions in the test set with the annotation (observed / expected)
 Expected (np): expected number of genomic regions in the test set with the annotation
 Hits (k): actual number of genomic regions in the test set with the annotation
 Genome Fraction (p): fraction of bases in the genome that lie in the domain of attraction of a gene with the annotation