Skip to end of metadata


Created by Unknown User (awenger), last modified by Unknown User (cmclean) on Jun 10, 2009
Go to start of metadata
You are viewing an old version of this page. View the current version.
Compare with Current
View Page History
« Previous
Version 4
Next »
What do the output columns mean?
General
 ID: Term identifier from the ontology
 Rank: ordinal rank of the pvalue compared to the pvalues of other annotations
 Raw pvalue: uncorrected pvalue from the hypergeometric test
 Bonferroni pvalue: Bonferroni corrected pvalue
 FDR qvalue: False discovery rate qvalue
 Fold Enrichment (kN/(nK)): fold enrichment of number of genes in the test set with the annotation (observed / expected)
 Expected (nK/N): expected number of genes in the test set with the annotation
 Observed (k): actual number of genes in the test set with the annotation
 Total Genes (K): number of genes in the genome with the annotation
 Term Coverage (k/K): fraction of all genes with the annotation that are tagged by the test set
 Rank: ordinal rank of the pvalue compared to the pvalues of other annotations
 Raw pvalue: uncorrected pvalue from the binomial test
 Bonferroni pValue: Bonferroni corrected pvalue
 FDR qValue: False discovery rate qvalue
 Fold Enrichment (k/(np)): fold enrichment of number of genomic regions in the test set with the annotation (observed / expected)
 Expected (np): expected number of genomic regions in the test set with the annotation
 Hits (k): actual number of genomic regions in the test set with the annotation
 Genome Fraction (p): fraction of bases in the genome that lie in the domain of attraction of a gene with the annotation