How to cite GREAT
Please cite GREAT as follows:
Cory Y McLean, Dave Bristor, Michael Hiller, Shoa L Clarke, Bruce T Schaar, Craig B Lowe, Aaron M Wenger, and Gill Bejerano. "GREAT improves functional interpretation of cis-regulatory regions". Nat. Biotechnol. 28(5):495-501, 2010.
A stable link to the publication is http://dx.doi.org/10.1038/nbt.1630.
Why Cite GREAT
Over the long run, the best way to assure the continued availability and development of GREAT is for us to be able to show its relevance and contribution to biomedical research. We thank you for your support!
Publications & Reprints
The above Nature Biotechnology paper is currently the inaugural GREAT publication. Reprints are available at http://bejerano.stanford.edu/publications.html#ref27.
Papers that cite GREAT
- Fujita, P.A. et al., The UCSC Genome Browser database: update 2011, Nucleic Acids Res., 39(Database issue):D876-882, 2011.
- Mak, H.C., Trends in computational biology--2010, Nature Biotechnol., 29(1):45-49, 2011.
- Novershtern, N. et al, Densely interconnected transcriptional circuits control cell states in human hematopoiesis, Cell, 144(2):296-309, 2011.
- Cullum, R. et al., The next generation: using new sequencing technologies to analyze gene regulation, Respirology, 16(2):210-222, 2011.
- Rada-Iglesias, A. et al., A unique chromatin signature uncovers early developmental enhancers in humans, Nature, 470(7333):279-283, 2011.
- Sullivan, A.L. et al., Serum Response Factor utilizes distinct promoter- and enhancer-based mechanisms to regulate cytoskeletal gene expression in macrophages, Mol. Cell. Biol., 31(4):861-875, 2011.
- Ma, Z.Y. et al., Sequence-specific regulator Prdm14 safeguards mouse ESCs from entering extraembryonic endoderm fates, Nature Struct. Mol. Biol., 18(2):120-127, 2011.
- McLean, C.Y. et al., Human-specific loss of regulatory DNA and the evolution of human-specific traits, Nature, 471(7337):216-219, 2011.
- Soccio, R.E. et al., Species-specific strategies underlying conserved functions of metabolic transcription factors, Mol. Endocrinol., 25(4):694-706, 2011.
- Capellini, T.D. et al., Pbx homeodomain proteins: TALEnted regulators of limb patterning and outgrowth, Dev. Dyn., 240(5):1063-1086, 2011.
- Capellini, T.D. et al., Control of pelvic girdle development by genes of the Pbx family and Emx2, Dev. Dyn., 240(5):1173-1189, 2011.
- Tijssen, M.R. et al., Genome-wide analysis of simultaneous GATA1/2, RUNX1, FLI1, and SCL binding in megakaryocytes identifies hematopoietic regulators, Dev. Cell, 20(5):597-609, 2011.
- LePendu, P. et al., Enabling enrichment analysis with the Human Disease Ontology, Journal of Biomedical Informatics, Available online 29 April 2011.
- Zentner, G.E. et al., Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions, Genome Research, 21(8):1273-1283, 2011.
- Stroud, H. et al., 5-Hydroxymethylcytosine is associated with enhancers and gene bodies in human embryonic stem cells, Genome Biology, 12:R54, 2011.
- Sandve, G.K. et al., The differential disease regulome, BMC Genomics, 12:353, 2011.
- Yoon, S.J. et al., HEB and E2A function as SMAD/FOXH1 cofactors, Genes Dev., 25(15):1654-1661, 2011.
- Ryu, S.H. et al., Transcriptional changes of secreted Wnt antagonists in hindlimb skeletal muscle during the lifetime of the C57BL/6J mouse, Mech. Ageing Dev., Epub ahead of print 9 Aug 2011.
- Lowe, C.B. et al., Three periods of regulatory innovation during vertebrate evolution, Science, 333(6045):1019-1024, 2011.
- Karczewski, K.J. et al., Cooperative transcription factor associations discovered using regulatory variation, Proc. Natl. Acad. Sci. USA, 108(32):13353-13358, 2011.
- Benson, C.C. et al., Identifying functional single nucleotide polymorphisms in the human CArGome, Physiol. Genomics, 43(18):1038-1048, 2011.
- Martin, D. et al., Phyloepigenomic comparison of great apes reveals a correlation between somatic and germline methylation states, Genome Research, epub ahead of print, Sept. 9, 2011.
We really appreciate people's supportive e-mails and re-cap a handful of them here to encourage folks to take the plunge.
Date: October 19, 2010
Subject: Re: great
Date: May 4, 2010